Package index • evalueHMM

E-process core

compute_eprocess(): Compute predictive e-processes from log predictive densities.
make_predictive_diagnostic(): Common interface for predictive e-diagnostics.
summarise_predictive_diagnostic(): Summarise predictive e-diagnostic results.
plot_eprocess(): Plot a predictive e-process

create_hmm_movement_parameters(): Create movement-HMM parameters
simulate_hmm_movement(): Simulate movement from a finite-state HMM
simulate_hmm_movement_copula(): Simulate movement with residual step-angle dependence
simulate_hmm_movement_local_copula(): Simulate movement with localized residual copula dependence
simulate_hsmm_movement(): Simulate movement from an HSMM-like dwell-time generator
simulate_hmm_movement_ar_angles(): Simulate movement with autoregressive angle residuals
simulate_wrapped_normal(): Simulate wrapped-normal angles
d_wrapped_normal(): Wrapped-normal density
p_wrapped_normal(): Wrapped-normal distribution function
hmm_forward_filter(): Forward filter a finite-state HMM
hmm_predictive_log_density(): Compute observable HMM predictive log-density
hmm_movement_log_emission(): Compute state-dependent log-emission densities
hmm_movement_predictive_log_density(): Compute movement-HMM observable predictive log-density

diagnostic_extra_state(): Diagnostic for an insufficient number of states
diagnostic_angle(): Diagnostic for angular distribution misspecification
diagnostic_step_angle_dependence(): Diagnostic for residual step-angle dependence
diagnostic_duration_blockwise(): Blockwise diagnostic for duration misspecification
diagnostic_long_horizon_straightness(): Long-horizon straightness diagnostic
diagnostic_composite_envelope(): Conservative finite-family composite-null diagnostic

diagnostic_mixture(): Predictable mixture of diagnostic e-increments
diagnostic_switch(): Predictable switch between diagnostics
localize_predictive_diagnostic(): Localize or temper a predictive diagnostic
time_window_weights(): Time-window localization weights
hmm_predictive_state_weights(): Predictive state weights from an HMM filter

gaussian_copula_log_density(): Gaussian copula log-density
hmm_movement_rosenblatt_residuals(): Sequential Rosenblatt residuals for movement HMMs
compute_block_straightness(): Compute block straightness
simulate_block_straightness_values(): Simulate block straightness values
fit_block_straightness_laws(): Fit beta approximations to block-straightness laws
hmm_family_predictive_log_density(): Predictive log-densities for a finite HMM family
hmm_composite_envelope_log_density(): Composite-envelope predictive log-density
summarise_hmm_parameter_family(): Summarise a finite HMM parameter family

estimate_hmm_movement_oracle(): Estimate movement-HMM parameters from known states
perturb_hmm_movement_parameters(): Perturb movement-HMM parameters
summarise_hmm_parameter_error(): Summarise parameter error for simulated HMMs